Andrew Woods

Remote

• Architected a React frontend backed by FastAPI and a Gradio AI interface over an agentic multi-omics system.
• Deployed containerized services to AWS EC2 (Docker Compose, Caddy, HTTPS, subpath routing), shipping omicsai.org/agentic-causal to the lab's demo platform serving papers under review at Oxford Bioinformatics.
• Developed LangGraph_Orchestrator, a LangGraph and Streamlit service coordinating multi-agent workflows across the platform.

Dept. of Biostatistics, Bioinformatics & Biomathematics · Washington, DC

• Designed a plan–act–verify architecture (LangGraph, GPT-4o) to evaluate whether agentic orchestration can replace hand-scripted RNA-seq pipelines, adapting preprocessing and embedding choices to the biological question.
• Formalized quantitative acceptance criteria — variance explained, resampling stability, cluster coherence, pathway concordance — as automated verification gates governing agent decisions.
• Encoded curated pathway structure (KEGG, Reactome, GO:BP, WikiPathways) as priors via gene–pathway incidence and Jaccard co-membership adjacency over DESeq2 variance-stabilized expression.
• Designed the ablation protocol benchmarking pathway-weighted embeddings against plain PCA and direct differential-expression baselines, with per-run artifact logging for reproducibility.

Los Angeles, CA

Relevant coursework: Multivariable Calculus, Differential Equations, Linear Algebra, Discrete Mathematics, Computer Programming 3: Advanced Topics in Computer Science.